Difference between revisions of "HOWTO use MCWrapper on AlmaLinux9 nodes"
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= PREREQUISTE = | = PREREQUISTE = | ||
| − | 1. Check what is | + | 1. Check what is your SHELL by doing echo $SHELL |
2. Check if swif2 and singularity commands exist if not add in your | 2. Check if swif2 and singularity commands exist if not add in your | ||
| − | .bashrc, export PATH=/user/local:$PATH | + | .bashrc (if echo $SHELL give bash), export PATH=/user/local:$PATH |
or | or | ||
| − | .cshrc, setenv PATH /user/local:$PATH | + | .cshrc (if echo $SHELL give tcsh), setenv PATH /user/local:$PATH |
'''WORK IN PROGRESS''' | '''WORK IN PROGRESS''' | ||
Revision as of 14:41, 9 August 2024
Contents
Introduction
How to use MCWrapper on an interactive AlmaLinux9 node. Both submitting and running the jobs currently has to be done in a CentOS7 container.
PREREQUISTE
1. Check what is your SHELL by doing echo $SHELL
2. Check if swif2 and singularity commands exist if not add in your
.bashrc (if echo $SHELL give bash), export PATH=/user/local:$PATH
or
.cshrc (if echo $SHELL give tcsh), setenv PATH /user/local:$PATH
WORK IN PROGRESS
RUN MCWrapper interactiveley
1. Open your favorite $SHELL in the CentOS7 container:
singularity exec --bind /cvmfs/oasis.opensciencegrid.org/gluex/group/halld:/group/halld,/scratch,/u/home,/usr/local,/work/halld /cvmfs/singularity.opensciencegrid.org/jeffersonlab/gluex_prod:v1 bash
or
singularity exec --bind /cvmfs/oasis.opensciencegrid.org/gluex/group/halld:/group/halld,/scratch,/u/home,/usr/local,/work/halld /cvmfs/singularity.opensciencegrid.org/jeffersonlab/gluex_prod:v1 tcsh
2. Set up gxenv:
source /group/halld/Software/build_scripts/gluex_env_boot_jlab.sh
3. Set up the environment with the last official xml file based on ccdb v1:
gxenv /group/halld/www/halldweb/html/halld_versions/version_5.17.0.xml
Run MCWrapper to register jobs
1. To go in the OS7 container and favorite $SHELL
singularity exec --bind /cvmfs/oasis.opensciencegrid.org/gluex/group/halld:/group/halld,/scratch,/u/home,/usr/local,/work/halld /cvmfs/singularity.opensciencegrid.org/jeffersonlab/gluex_prod:v1 bash
or
singularity exec --bind /cvmfs/oasis.opensciencegrid.org/gluex/group/halld:/group/halld,/scratch,/u/home,/usr/local,/work/halld /cvmfs/singularity.opensciencegrid.org/jeffersonlab/gluex_prod:v1 tcsh
2.
source /group/halld/Software/build_scripts/gluex_env_boot_jlab.sh
or possibly
source /group/halld/Software/build_scripts/gluex_env_jlab.csh
3.
gxenv /group/halld/www/halldweb/html/halld_versions/version_5.17.0.xml
4. Set MCWRAPPER_CENTRAL to new version (should be accessible soon - date of today is August 7th, 2024)
setenv MCWRAPPER_CENTRAL path to new version
or
export MCWRAPPER_CENTRAL=path to new version
if it is not working copy this python steering file here: /work/halld/home/ijaegle/public/FromBoToMe/my_gluex_MC.py
5. In your MC.cfg, use
BATCH_SYSTEM=swif2cont
and
OS=el9
