Difference between revisions of "Offline HOWTO List"
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| − | == Setup / Getting Started == | + | == Setup / Getting Started (Main) == |
| + | <!-- === The Build Scripts Method === --> | ||
| + | * [https://halldweb.jlab.org/docs/build_scripts_web/ Build Scripts: A Version Management System for GlueX] | ||
| + | |||
| + | <!-- === The HDPM Method === | ||
| + | * [[Hall_D_Package_Manager | hdpm - Hall D Package Manager]] | ||
| + | --> | ||
| + | |||
| + | == Setup / Getting Started (Other) == | ||
| + | * [[Guide_to_Using_Git | Guide to Using Git]] | ||
| + | *[[Installing_a_Modern_GCC_Quickly_with_Software_Collections | Installing a Modern GCC Quickly with Software Collections]] | ||
| + | * [[Getting Started with the GlueX Analysis Software on the JLab CUE|HOWTO get started with the GlueX Analysis Software on the JLab CUE]] | ||
| + | * [[SCons_Build_System|HOWTO build the GlueX software with SCons]], ([[Media:20131113_scons.pdf|Presentation]]) | ||
| + | * [[HOWTO mount the Hall D work disk on your desktop Linux machine]] | ||
| + | * [[How to Setup Visual Studio Code for the ifarm|A complete guide for setting up VS Code for the ifarm]] | ||
| + | <!-- | ||
* [[Getting started with GlueX Software|HOWTO get started with Hall-D Software]] | * [[Getting started with GlueX Software|HOWTO get started with Hall-D Software]] | ||
* [[Getting started with Hall-D Software on the JLab CUE|HOWTO get started with Hall-D Software on the JLab CUE]] | * [[Getting started with Hall-D Software on the JLab CUE|HOWTO get started with Hall-D Software on the JLab CUE]] | ||
| − | |||
| − | |||
* [[Install_HallD_Software_on_Ubuntu|HOWTO install HallD software on Ubuntu from scratch]] | * [[Install_HallD_Software_on_Ubuntu|HOWTO install HallD software on Ubuntu from scratch]] | ||
| + | * [[Quick Start Guide to building GlueX Software|HOWTO get started quickly with Hall-D Software]] | ||
* [[HOWTO set up the GlueX environment]] | * [[HOWTO set up the GlueX environment]] | ||
* [[HOWTO use a pre-built release]] | * [[HOWTO use a pre-built release]] | ||
| − | + | --> | |
| − | + | ||
== JANA / DANA == | == JANA / DANA == | ||
| Line 17: | Line 30: | ||
== Simulation == | == Simulation == | ||
| − | * [[HOWTO simulate | + | * [[HOWTO to simulate a single-particle gun]] |
* [[HOWTO to generate electromagnetic background]] | * [[HOWTO to generate electromagnetic background]] | ||
| − | * [[HOWTO run | + | * [[HOWTO install and run HDGeant4]] |
| − | * [[HOWTO | + | * [[HOWTO merge real noise into simulated events]] |
| + | * [[HOWTO merge events from different sources]] | ||
| + | * [[HOWTO run hdgeant simulations using ccdb geometry]] | ||
| + | * [[HOWTO use hdgeant4 as a beam Monte Carlo generator]] | ||
| + | * [[HOWTO force hdgeant4 to decay particles in certain channels]] | ||
| + | * [[HOWTO perform a triplet polarimeter simulation]] | ||
| + | * [[HOWTO generate Bethe-Heitler pairs in the GlueX target]] | ||
| + | * [[HOWTO run an analysis launch on bggen simulations]] | ||
| + | * [[HOWTO Use EvtGen to simulate particle decays in GlueX]] | ||
| + | * [[HOWTO generate mix-in random trigger files]] | ||
| + | * [[HOWTO use MCWrapper on AlmaLinux9 nodes]] | ||
== Geometry & Calibration == | == Geometry & Calibration == | ||
| − | * [[HOWTO Access Calibration Constants from JANA/DANA]] | + | * [[HOWTO Access Calibration Constants from JANA/DANA]] (updates needed) |
* [[HOWTO Access Geometry Information from JANA/DANA]] | * [[HOWTO Access Geometry Information from JANA/DANA]] | ||
* [[HOWTO Quickly access Geometry Information using hd_geom_query]] | * [[HOWTO Quickly access Geometry Information using hd_geom_query]] | ||
| − | * [[HOWTO Modify the Detector Geometry]] | + | * [[HOWTO Modify the Detector Geometry]] (updates needed) |
| − | + | ||
* [[HOWTO build the CCDB]] | * [[HOWTO build the CCDB]] | ||
| + | * [[HOWTO Install CCDB on your local machine]] | ||
| + | * [[HOWTO View Geometry and test volumes with a geantino]] | ||
== Analysis == | == Analysis == | ||
| + | * [https://halldweb.jlab.org/wiki-private/index.php/HOWTO_write_an_analysis_note HOWTO write an Analysis Note] | ||
* [[GlueX_Analysis_Software | HOWTO Perform a GlueX Analysis]] | * [[GlueX_Analysis_Software | HOWTO Perform a GlueX Analysis]] | ||
| + | * [[HOWTO Execute a Launch using NERSC]] | ||
| + | * [[HOWTO Execute a Launch using PSC]] | ||
| + | * HOWTO Execute a Launch on the OSG | ||
* [[HOWTO Use TMVA for a Boosted Decision Tree Analysis]] | * [[HOWTO Use TMVA for a Boosted Decision Tree Analysis]] | ||
* [[Analysis_FAQ | Analysis Software FAQ]] | * [[Analysis_FAQ | Analysis Software FAQ]] | ||
| + | * [[Transition from SWIF to SWIF2]] | ||
| + | * [[HOWTO use AmpTools on the JLab farm GPUs]] | ||
| + | * [[HOWTO use AmpTools on the JLab farm with MPI]] | ||
| + | * [[HOWTO read GlueX hddm data from a jupyter notebook]] | ||
== Software Management == | == Software Management == | ||
| − | |||
| − | |||
* [[HOWTO use the scan-build Code Analyzer]] | * [[HOWTO use the scan-build Code Analyzer]] | ||
| + | * [[HOWTO use the GlueX Singularity Container]] | ||
| + | * [[HOWTO run jobs on the osg using the GlueX singularity container]] | ||
| + | * [[HOWTO use prebuilt GlueX software from any linux user account using cvmfsexec]] | ||
| + | * [[HOWTO Install and Use the CVMFS Client]] | ||
| + | * [[HOWTO Create a New Hall D Software Release]] | ||
| + | |||
| + | |||
== Miscellaneous == | == Miscellaneous == | ||
| + | * [[HOWTO Run a 32-bit windows application in a container]] | ||
| + | * [[HOWTO Access data offsite via OSDF/Pelican]] | ||
| + | * [[HOWTO Copy data offsite using Globus]] | ||
| + | * [[HOWTO Check for memory leaks with valgrind]] | ||
* [[HOWTO do a Radiation Length Scan]] | * [[HOWTO do a Radiation Length Scan]] | ||
| − | * [[HOWTO Project a charged track to a radius or plane]] | + | * [[HOWTO Project a charged track to a radius or plane]] (updates needed) |
* [[HOWTO Convert a B-field Map from Excel]] | * [[HOWTO Convert a B-field Map from Excel]] | ||
* [[HOWTO archive files to the tape library]] | * [[HOWTO archive files to the tape library]] | ||
| + | * [[HOWTO archive a large directory of files to the tape library]] | ||
* [[HOWTO use the stand-alone HDDS system]] | * [[HOWTO use the stand-alone HDDS system]] | ||
| − | |||
| − | |||
| − | |||
* [[HOWTO get started with the RootSpy GUI software]] | * [[HOWTO get started with the RootSpy GUI software]] | ||
* [[Diagnosing segmentation faults in reconstruction_software|HOWTO diagnose segmentation faults in reconstruction software]] | * [[Diagnosing segmentation faults in reconstruction_software|HOWTO diagnose segmentation faults in reconstruction software]] | ||
| Line 54: | Line 93: | ||
* [[Using the Grid|HOWTO use the grid]] | * [[Using the Grid|HOWTO use the grid]] | ||
* [[HOWTO backup and install the GlueX wiki]] | * [[HOWTO backup and install the GlueX wiki]] | ||
| − | * [[HOWTO build and install GEANT4.10. | + | * [[HOWTO build and install GEANT4.10.02 on OS X]] |
| + | * [[HOWTO establish a remote desktop on the ifarm starting from Windows]] | ||
| + | * [[HOWTO copy a file from the ifarm to home]] | ||
| + | * [[HOWTO update a condition on the RCDB]] | ||
| + | |||
| + | == Deprecated or Outdated == | ||
| + | |||
| + | * [[HOWTO Run Gluex Software with GCC 8 in a CentOS 7 Container]] | ||
| + | * [[HOWTO Run GlueX Software with GCC 8 in a CentOS 8 Container]] | ||
| + | * [[HOWTO Run Gluex Software with a GCC 8 module]] | ||
| + | * [[HOWTO simulate and analyze b1pi events | HOWTO simulate b<sub>1</sub>π events]] | ||
| + | * [[HOWTO run the semi-parametric Monte Carlo]] | ||
| + | * [[HOWTO convert MC data to EVIO and replay it]] | ||
| + | * [[HOWTO visually inspect the simulation geometry]] | ||
| + | * [[SWIF_Analysis_Jobs | Submitting SWIF Analysis Jobs]] (deprecated) | ||
| + | * [[HOWTO extract photons or pi0's from the framework]] | ||
| + | * [[HOWTO do a kinematic fit for etapi0p events]] | ||
| + | * [[Package Management|HOWTO install and/or create software packages]] | ||
| + | * [[HOWTO get your jobs to run on the Grid]] | ||
| + | * [[HOWTO save tracking results to an HDDM or EVIO file for later playback]] | ||
| + | * [[HOWTO ded: Install & Run]] | ||
Latest revision as of 15:20, 3 April 2025
Contents
Setup / Getting Started (Main)
Setup / Getting Started (Other)
- Guide to Using Git
- Installing a Modern GCC Quickly with Software Collections
- HOWTO get started with the GlueX Analysis Software on the JLab CUE
- HOWTO build the GlueX software with SCons, (Presentation)
- HOWTO mount the Hall D work disk on your desktop Linux machine
- A complete guide for setting up VS Code for the ifarm
JANA / DANA
- HOWTO run a JANA program with multiple threads
- HOWTO make a plugin (old slides)
- HOWTO add private code to a DANA application
- HOWTO get a tree of low-level, DAQ quantities
Simulation
- HOWTO to simulate a single-particle gun
- HOWTO to generate electromagnetic background
- HOWTO install and run HDGeant4
- HOWTO merge real noise into simulated events
- HOWTO merge events from different sources
- HOWTO run hdgeant simulations using ccdb geometry
- HOWTO use hdgeant4 as a beam Monte Carlo generator
- HOWTO force hdgeant4 to decay particles in certain channels
- HOWTO perform a triplet polarimeter simulation
- HOWTO generate Bethe-Heitler pairs in the GlueX target
- HOWTO run an analysis launch on bggen simulations
- HOWTO Use EvtGen to simulate particle decays in GlueX
- HOWTO generate mix-in random trigger files
- HOWTO use MCWrapper on AlmaLinux9 nodes
Geometry & Calibration
- HOWTO Access Calibration Constants from JANA/DANA (updates needed)
- HOWTO Access Geometry Information from JANA/DANA
- HOWTO Quickly access Geometry Information using hd_geom_query
- HOWTO Modify the Detector Geometry (updates needed)
- HOWTO build the CCDB
- HOWTO Install CCDB on your local machine
- HOWTO View Geometry and test volumes with a geantino
Analysis
- HOWTO write an Analysis Note
- HOWTO Perform a GlueX Analysis
- HOWTO Execute a Launch using NERSC
- HOWTO Execute a Launch using PSC
- HOWTO Execute a Launch on the OSG
- HOWTO Use TMVA for a Boosted Decision Tree Analysis
- Analysis Software FAQ
- Transition from SWIF to SWIF2
- HOWTO use AmpTools on the JLab farm GPUs
- HOWTO use AmpTools on the JLab farm with MPI
- HOWTO read GlueX hddm data from a jupyter notebook
Software Management
- HOWTO use the scan-build Code Analyzer
- HOWTO use the GlueX Singularity Container
- HOWTO run jobs on the osg using the GlueX singularity container
- HOWTO use prebuilt GlueX software from any linux user account using cvmfsexec
- HOWTO Install and Use the CVMFS Client
- HOWTO Create a New Hall D Software Release
Miscellaneous
- HOWTO Run a 32-bit windows application in a container
- HOWTO Access data offsite via OSDF/Pelican
- HOWTO Copy data offsite using Globus
- HOWTO Check for memory leaks with valgrind
- HOWTO do a Radiation Length Scan
- HOWTO Project a charged track to a radius or plane (updates needed)
- HOWTO Convert a B-field Map from Excel
- HOWTO archive files to the tape library
- HOWTO archive a large directory of files to the tape library
- HOWTO use the stand-alone HDDS system
- HOWTO get started with the RootSpy GUI software
- HOWTO diagnose segmentation faults in reconstruction software
- HOWTO get a personal web directory at JLab
- HOWTO use the grid
- HOWTO backup and install the GlueX wiki
- HOWTO build and install GEANT4.10.02 on OS X
- HOWTO establish a remote desktop on the ifarm starting from Windows
- HOWTO copy a file from the ifarm to home
- HOWTO update a condition on the RCDB
Deprecated or Outdated
- HOWTO Run Gluex Software with GCC 8 in a CentOS 7 Container
- HOWTO Run GlueX Software with GCC 8 in a CentOS 8 Container
- HOWTO Run Gluex Software with a GCC 8 module
- HOWTO simulate b1π events
- HOWTO run the semi-parametric Monte Carlo
- HOWTO convert MC data to EVIO and replay it
- HOWTO visually inspect the simulation geometry
- Submitting SWIF Analysis Jobs (deprecated)
- HOWTO extract photons or pi0's from the framework
- HOWTO do a kinematic fit for etapi0p events
- HOWTO install and/or create software packages
- HOWTO get your jobs to run on the Grid
- HOWTO save tracking results to an HDDM or EVIO file for later playback
- HOWTO ded: Install & Run
